Software rebuild (cloud2, master, imagexd, enzyme2, vcfdumper)

Bug fixes and small features added.

Main changes: Improvements for the upcoming publications.

Two new preview articles are online

Our new research articles (A three-dimensional musculoskeletal model of the dog) and (Calculating the optimal hematocrit under the constraint of constant cardiac power) are online as preprint (bioRxiv).

Stark H, Fischer MS, Hunt A, Young F, Quinn R & Andrada E (2020) A three-dimensional musculoskeletal model of the dog. BioRxiv:2020.07.16.205856; DOI:10.1101/2020.07.16.205856

Sitina M, Stark H & Schuster S (2020) Calculating the optimal hematocrit under the constraint of constant cardiac power. BioRxiv:2020.06.09.141374; DOI:10.1101/2020.06.09.141374

A new article is online

Our new research article (Tracking tendon fibers to their insertion – a 3D analysis of the Achilles tendon enthesis in mice) is online (Acta Biomaterialia).

Software rebuild (cloud2, master, imagexd, enzyme2, vcfdumper)

Bug fixes and new features added (19.05.2020).

Software

Main changes: For all, please look into the macros!
@cloud2: New color maps. See also the new script description!
@cloud2: New splitting options: curvature or torsion.
@imagexd: New image and scalar command (median).
@imagexd: Dual and triple energy CT reconstruction (scalar.intensity).
@imagexd: New GUI for stack calculations – dual-energy, triple energy, subtract, mean, median (combine.starkrats).
@Ximagexd & Xenzyme2: Added for GUI development.
@enzyme2: New commands for publication mining.
@fasta2max: Added to convert fasta data to protein susceptibilities.

Bugs:
@cloud2: Fixing the analytical calculation for curvature and torsion (mesh>1d).
@imagexd & enzyme2: Now also correct loading with master.
Many thanks to Julian Sartori for his help!

Two new preview articles are online

Our new research articles (Influence of spatial structure on protein damage susceptibility – A bioinformatics approach) and (Tracking tendon fibers to their insertion – a 3D analysis of the Achilles tendon enthesis in mice) are online as preprint (bioRxiv).

Fichtner M, Schuster S & Stark H (2020) Influence of spatial structure on protein damage susceptibility – A bioinformatics approach. BioRxiv:2020.03.03.973099; DOI:10.1101/2020.03.03.973099

Sartori J & Stark H (2020) Tracking tendon fibers to their insertion – a 3D analysis of the Achilles tendon enthesis in mice. BioRxiv:2020.02.25.964759; DOI:10.1101/2020.02.25.964759

Software rebuild (cloud2, master, imagexd, enzyme2, vcfdumper)

Bug fixes and new features added (28.02.2020).
Many thanks to Julian Sartori for his help!

Software

Main changes: For all, please look into the macros!
@imagexd: New image adjusts tools (image.setadjust…).
@imagexd: A new streamline condition (vector.stream.stop.contrast).
@imagexd: Diffusion calculation – 3 times faster.
@imagexd: More statistics for scalar.
@cloud2: Lines materials are now saved.
@cloud2: More tools to store additional parameters of lines (in t – angle, tortuosity, curvature or torsion).

Bugs:
@cloud2: Fixing the derivation calculation (affects curvature and torsion).
@All: PNG can now also save large images